Vestige: maximum likelihood phylogenetic footprinting.

Entrez PubMed: "Phylogenetic footprinting is the identification of functional regions of DNA by their evolutionary conservation. This is achieved by comparing orthologous regions from multiple species and identifying the DNA regions that have diverged less than neutral DNA. "

Vestige: maximum likelihood phylogenetic footprinting. Wakefield MJ, Maxwell P, Huttley GA. BMC Bioinformatics. 2005 May 29;6(1):130. Free Full Text Article